python main.py Fig.S6E_843_300_cortex_dABE_2.fastq.zip out/Fig.S6E_843_300_cortex_dABE_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_844_300_cortex_dABE_1.fastq.zip out/Fig.S6E_844_300_cortex_dABE_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_844_300_cortex_dABE_2.fastq.zip out/Fig.S6E_844_300_cortex_dABE_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_845_300_cortex_dABE_1.fastq.zip out/Fig.S6E_845_300_cortex_dABE_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_845_300_cortex_dABE_2.fastq.zip out/Fig.S6E_845_300_cortex_dABE_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_850_300_cortex_dABE.fastq.zip out/Fig.S6E_850_300_cortex_dABE.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_852_300_cortex_dABE_1.fastq.zip out/Fig.S6E_852_300_cortex_dABE_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_852_300_cortex_dABE_2.fastq.zip out/Fig.S6E_852_300_cortex_dABE_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_852_300_cortex_dABE_3.fastq.zip out/Fig.S6E_852_300_cortex_dABE_3.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_853_300_cortex_dABE_1.fastq.zip out/Fig.S6E_853_300_cortex_dABE_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_853_300_cortex_dABE_2.fastq.zip out/Fig.S6E_853_300_cortex_dABE_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_1609_300_untreated_1.fastq.zip out/Fig.S6E_1609_300_untreated_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_1609_300_untreated_2.fastq.zip out/Fig.S6E_1609_300_untreated_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_1640_300_untreated_1.fastq.zip out/Fig.S6E_1640_300_untreated_1.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6E_1640_300_untreated_2.fastq.zip out/Fig.S6E_1640_300_untreated_2.fastq.zip -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
